miRBase entry: cfa-mir-8794-1

Stem-loop cfa-mir-8794-1

Accession

MI0027874

Description

Canis familiaris cfa-mir-8794-1 precursor miRNA

Sequence

ccucuuaucccaguggagcugauguccugagcuggaaucggcaaguggccuggggacaaaauggUGCCCCAUCAUCAGCCUCCCCAGUgaagggcucucuguccucugcacgg
..........(((.(((...((.(((((..(((((....(((..((((..(((((((......)).)))))))))..)))...)))))..)))))))....))).))).....

Structure

ccucuuaucc   u   -gcu  u     ga     aauc   aa    cc     -  aa 
          cag gga    ga guccu  gcugg    ggc  gugg  ugggg ac  a
          ||| |||    || |||||  |||||    |||  ||||  ||||| ||   
          guc ccu    cu cggga  UGACC    CCG  UACU  ACCCC Ug  a
-----ggcac   u   gucu  -     ag     -CCU   AC    --     G  gu

Annotation confidence Not enough data

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Genome context

chr16: 10434119-10434231 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-8794-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-8794

Accession	MIMAT0034284
Description	Canis familiaris cfa-miR-8794 mature miRNA
Sequence	65 - UGCCCCAUCAUCAGCCUCCCCAGU - 88
Evidence	experimental Illumina [1]

References

PubMed ID: 24692655
Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
"Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
"Mol Biol Evol (2014) 31:1536-1545