miRBase entry: cfa-mir-8800

Stem-loop cfa-mir-8800


Accession
MI0027880
Description
Canis lupus familiaris cfa-mir-8800 precursor miRNA


Sequence

34 reads, 1.0 reads per million, 17 experiments
aagaauggaugcugaagggacucaguuggagugggcucucagguuugagacuggugcaguaggagugagcUAGCCUGGAUCUCUGAUUUGCAGAGcacacucacaaccugggcuacaauugaugc
.................((.(((((((((((((.(((((((((((.((((((((.(((((........))).)))))).)))).)))))).))))).))))).))).)))))))...........

Structure
aagaauggaugcugaag  a     -   -     g     -      u    -    u  -   agg 
                 gg cucag uug gagug gcucu cagguu gaga cugg gc agu   a
                 || ||||| ||| ||||| ||||| |||||| |||| |||| || |||    
                 uc ggguc aac cucac cGAGA GUUUAG CUCU GGUC CG Ucg   g
------cguaguuaaca  -     c   a     a     C      U    A    -  A   agu 


Annotation confidence Not enough data
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Genome context
20: 38313522-38313646 [-]

Database links

Mature cfa-miR-8800-3p

Accession MIMAT0034290
Description Canis lupus familiaris cfa-miR-8800-3p mature miRNA
Sequence 71 - UAGCCUGGAUCUCUGAUUUGCAGAG - 95
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545