Stem-loop cfa-mir-8801

Accession

MI0027881

Description

Canis lupus familiaris cfa-mir-8801 precursor miRNA

Sequence

1505 reads, 150.0 reads per million, 9 experiments

uaaaggccagggaccugcugcucacuggacagUCAUUGUAUAGAGGAUGGcuccaggcuccacacaUCCACUGCGAGACUGUUGUACGUAGgcaugagggggggcuaccacagaa
....((((.....(((..((((.((..(((((((.((((..((.(((((...............))))).)))))))))))))....)).))))..)))...)))).........

Structure

-----uaaa    aggga   gc    c  --ug       A    AU  A     Gcucca 
         ggcc     ccu  ugcu ac    gacagUC UUGU  AG GGAUG      g
         ||||     |||  |||| ||    ||||||| ||||  || |||||      g
         ucgg     gga  acgG UG    UUGUCAG AGCG  UC CCUac      c
aagacacca    --ggg   gu    A  CAUG       -    --  A     acaccu 

Annotation confidence Low

Genome context

20: 44089161-44089275 [+]

Mature cfa-miR-8801-5p

• Accession: MIMAT0034291
• Description: Canis lupus familiaris cfa-miR-8801-5p mature miRNA
• Sequence: 33 - UCAUUGUAUAGAGGAUGG - 50
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-8801-3p

• Accession: MIMAT0051969
• Description: Canis lupus familiaris cfa-miR-8801-3p mature miRNA
• Sequence: 67 - UCCACUGCGAGACUGUUGUACGUAG - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545