Stem-loop cfa-mir-8802

Accession

MI0027882

Description

Canis familiaris cfa-mir-8802 precursor miRNA

Sequence

acguccaaccauggagccaccugggcacccacuaagaccaUUUUUGAUGUUUCUCUCUCGGCUuggggccuccuggucgagcagcugcuauuaaggcauguggucaggcugugucccagauuuguaggagaccgugugguc
..(.(((..(((((..((((((((((((...((..(((((((((((((((....(((((((((.((.....)).))))))).))..)).)))))))...))))))))...))).)))))....)).))...)))))))).)

Structure

ac u   ac     -ag  -  ----     -   cca  aa      ---       -  UUCU  -       u  g 
  g cca  caugg   cc ac    cuggg cac   cu  gaccaU   UUUUGAU GU    CU CUCGGCU gg g
  | |||  |||||   || ||    ||||| |||   ||  ||||||   ||||||| ||    || ||||||| || c
  c ggu  gugcc   gg ug    gaccc gug   ga  cuggug   ggaauua cg    ga gagcugg cc c
-- u   --     aga  a  uuua     u   ucg  --      uac       u  --uc  c       u  u 

Annotation confidence Not enough data

Genome context

chr20: 55613223-55613363 [+]

Mature cfa-miR-8802

• Accession: MIMAT0034292
• Description: Canis familiaris cfa-miR-8802 mature miRNA
• Sequence: 41 - UUUUUGAUGUUUCUCUCUCGGCU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545