Stem-loop cfa-mir-8803

Accession

MI0027883

Description

Canis lupus familiaris cfa-mir-8803 precursor miRNA

Sequence

1670 reads, 3.0 reads per million, 70 experiments

aaaaggcauugauuaucuugcaaaaccaggaagcaccaguaUGGCUGGAUCAGGGGCUCAGGUGcugcuuuuaucccUCAGCCCCUGAUUCUCUAGCUggcucuucugcuugcagccacgugaugcucccucuacac
....(((((((......((((((.....(((((..(((((.(((..((((((((((((.(((.............))).)))))))))))).))))))))..)))))..)))))).....)))))))..........

Structure

------aaaa       auuauc      aacca     ca     a   CU            C   UGcug 
          ggcauug      uugcaa     ggaag  ccagu UGG  GGAUCAGGGGCU AGG     c
          |||||||      ||||||     |||||  ||||| |||  |||||||||||| |||     u
          ucguagu      gacguu     ucuuc  ggUCG AUC  CUUAGUCCCCGA Ucc     u
cacaucuccc       -gcacc      ---cg     uc     -   -U            C   cuauu 

Annotation confidence High

Genome context

20: 44818450-44818586 [-]

Mature cfa-miR-8803-5p

• Accession: MIMAT0051970
• Description: Canis lupus familiaris cfa-miR-8803-5p mature miRNA
• Sequence: 42 - UGGCUGGAUCAGGGGCUCAGGUG - 64
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-8803-3p

• Accession: MIMAT0034293
• Description: Canis lupus familiaris cfa-miR-8803-3p mature miRNA
• Sequence: 78 - UCAGCCCCUGAUUCUCUAGCU - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545