Stem-loop cfa-mir-8809

Accession

MI0027889

Description

Canis familiaris cfa-mir-8809 precursor miRNA

Sequence

gaaaugguuugcucaaguccgucgucacgagaggaucaggUCAUUGGCUGAGCCCGGAACCGGGGaggaggcccgagcgcaggccgccuucuccgcccccgggugcagcgcaagggcgcagccucugccgugcgugugcaaguga
.......(((((.((.......((.(((((((((.....(((.(((((((.((((((...((((((((.((((........)))).))))).)))...)))))).)))).))).)))....)))))..)))))))).)))))...

Structure

gaaaugg     u  aguccgu  u    --     aucag   A   -    A      AAC   -     a    cga 
       uuugc ca       cg cacg  agagg     gUC UUG GCUG GCCCGG   CGG GGagg ggcc   g
       ||||| ||       || ||||  |||||     ||| ||| |||| ||||||   ||| ||||| ||||    
       gaacg gu       gc gugc  ucucc     cgg aac cgac ugggcc   gcc cuucc ccgg   c
----agu     u  -------  -    cg     -gacg   g   g    g      ccc   u     g    acg 

Annotation confidence Not enough data

Genome context

chr24: 47407915-47408059 [+]

Mature cfa-miR-8809

• Accession: MIMAT0034299
• Description: Canis familiaris cfa-miR-8809 mature miRNA
• Sequence: 41 - UCAUUGGCUGAGCCCGGAACCGGGG - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545