Stem-loop cfa-mir-8813-1

Accession

MI0027893

Description

Canis lupus familiaris cfa-mir-8813-1 precursor miRNA

Sequence

104 reads, 6.0 reads per million, 14 experiments

ucccagggcgcuuagcacagacccuggugaccugaggcUCCCUGGCUGUCACUCUGUCCCAggcccguccuggccgcgggCACAGGCUGAGUCGCAGUAGAGUCUgugggguccugacccuggcaucuggccgccccuggaaggc
..((((((.((...((.((((.((.((((((((.((((((.(((....(((.((((((((.((((......))))..))).))))).)))....)))..))))))...)))))...)))..))..)))))).)))))))).....

Structure

---uc      c  uua  a    -c  -u   ---     --g      -C   GCUG   C     -   -A    cg 
     ccaggg gc   gc caga  cc  ggu   gaccu   aggcUC  CUG    UCA UCUGU CCC  ggcc  u
     |||||| ||   || ||||  ||  |||   |||||   ||||||  |||    ||| ||||| |||  ||||   
     gguccc cg   cg gucu  gg  cca   cuggg   UCUGAG  GAC    AGU GGACA ggg  ccgg  c
cggaa      -  --c  -    ac  uc   guc     gug      AU   GCUG   C     C   cg    uc 

Annotation confidence Not enough data

Genome context

21: 51925358-51925502 [+]

Mature cfa-miR-8813-1-5p

• Accession: MIMAT0051997
• Description: Canis lupus familiaris cfa-miR-8813-1-5p mature miRNA
• Sequence: 39 - UCCCUGGCUGUCACUCUGUCCCA - 61
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-8813-3p

• Accession: MIMAT0034303
• Description: Canis lupus familiaris cfa-miR-8813-3p mature miRNA
• Sequence: 81 - CACAGGCUGAGUCGCAGUAGAGUCU - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545