Stem-loop cfa-mir-8819

Accession

MI0027900

Description

Canis lupus familiaris cfa-mir-8819 precursor miRNA

Sequence

161 reads, 2.0 reads per million, 47 experiments

ccaggcggagugggaugacuaugugcccaaacUCUGUGAACAGCUGUCUGGGAAGUAgggcagugcugggagacaguagcugucccagaagucucaagcagUGUUCUCAAGUUCAGUGAugcauguagauuucuccacuuucccu
..(((.(((((((((...((((((((.((((((.((.(((((.((((.(((((....(((((((((((.....))))).))))))......))))).))))))))).))))))...))..))))))))...)).))))))).)))

Structure

cc   c       -  uga        -c  ---    C  U     G    C     --AGUA      -     g 
  agg ggagugg ga   cuaugugc  ca   aacU UG GAACA CUGU UGGGA      gggcag ugcug g
  ||| ||||||| ||   ||||||||  ||   |||| || ||||| |||| |||||      |||||| ||||| a
  ucc uuucacc cu   gauguacg  GU   UUGA AC CUUGU gacg acucu      ccuguc augac g
--   c       u  uua        uA  GAC    -  U     -    a     gaagac      g     a 

Annotation confidence Not enough data

Genome context

26: 14788198-14788342 [+]

Mature cfa-miR-8819-5p

• Accession: MIMAT0051972
• Description: Canis lupus familiaris cfa-miR-8819-5p mature miRNA
• Sequence: 33 - UCUGUGAACAGCUGUCUGGGAAGUA - 57
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-8819-3p

• Accession: MIMAT0034309
• Description: Canis lupus familiaris cfa-miR-8819-3p mature miRNA
• Sequence: 102 - UGUUCUCAAGUUCAGUGA - 119
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545