Stem-loop cfa-mir-8820

Accession

MI0027901

Description

Canis lupus familiaris cfa-mir-8820 precursor miRNA

Sequence

48 reads, 2.0 reads per million, 21 experiments

caucacaugaauugaccuguggacccgacgucucaUCAUAGCUGCUGUCACCCUCUGACCccugacuaguccggagaccugaggugggggggaggggugucagcucugugcauggggccaugagcagcuccugga
...((((.(......).))))........((((((((((((..((((.(((((.((..(((((.(((..((.((...)).))))).))))).))))))).)))).))))).)))))))((.(((...))).))..

Structure

caucacaugaauugaccuguggacccgac       -     CU    U     U  GA     g   ag  c  a 
                             gucucaU CAUAG  GCUG CACCC CU  CCccu acu  uc gg  
                             ||||||| |||||  |||| ||||| ||  ||||| |||  || || g
                             cggggua guguc  cgac guggg ga  ggggg ugg  ag cc  
------------agguccucgacgaguac       c     -u    u     -  -g     g   --  u  a 

Annotation confidence Not enough data

Genome context

25: 27694724-27694858 [+]

Mature cfa-miR-8820-5p

• Accession: MIMAT0034310
• Description: Canis lupus familiaris cfa-miR-8820-5p mature miRNA
• Sequence: 36 - UCAUAGCUGCUGUCACCCUCUGACC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545