Stem-loop cfa-mir-8823

Accession

MI0027904

Description

Canis lupus familiaris cfa-mir-8823 precursor miRNA

Sequence

6 reads, 2.0 reads per million, 6 experiments

ccugcucuccuccuccaaagaucccucaggugaucaauaaUUCCUUCCCGAGACUUUGCUUUAAUugcuaggaucagggggcaguuaggaugaguuagagguuggggaggagauuacagugugugggagauggggguggauggag
.((.(..(((.((((((....((((.((.((((((......((((((((((..((((((((((((((((..........))))))))....))).))))).))))))))))))))))..))...))))..)))))).))).).))

Structure

c  g uc   u      aaga    --u  -g      aauaaU          GA     -   ----        agga 
 cu c  ucc ccucca    uccc   ca  gugauc      UCCUUCCCGA  CUUUG CUU    UAAUugcu    u
 || |  ||| ||||||    ||||   ||  ||||||      ||||||||||  ||||| |||    ||||||||     
 ga g  agg gggggu    aggg   gu  cauuag      aggagggguu  gagau gag    auugacgg    c
-  g -u   u      --ag    ugu  ga      ------          -g     u   uagg        ggga 

Annotation confidence Not enough data

Genome context

25: 45511770-45511914 [-]

Mature cfa-miR-8823-5p

• Accession: MIMAT0034313
• Description: Canis lupus familiaris cfa-miR-8823-5p mature miRNA
• Sequence: 41 - UUCCUUCCCGAGACUUUGCUUUAAU - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545