Stem-loop cfa-mir-8827

Accession

MI0027910

Description

Canis familiaris cfa-mir-8827 precursor miRNA

Sequence

ugccaguucuucccagcggcccagcucccuaaccucggcuUCCUCCUCGUGGUGAGCCUGGGCUcuagccugcccagcucagagcccauuaccugcagacacgaagaagaugccggcacucaggaugauguugugucgagucu
................((((.(((((((((....(((((.((.((.(((((.((((..(((((((((((.......))).))))))))....)).))..))))).)).)).))))).....)))..)).)))).)))).....

Structure

ugccaguucuucccag    c    -  --   -aacc     u  C  C     -G  -  --CC        -   cu 
                cggc cagc uc  ccu     ucggc UC UC UCGUG  UG AG    UGGGCUcu agc  g
                |||| |||| ||  |||     ||||| || || |||||  || ||    |||||||| |||  c
                gcug guug ag  gga     ggccg ag ag agcac  ac uc    acccgaga ucg  c
-----------ucuga    u    u  ua   cucac     u  a  a     ag  g  cauu        c   ac 

Annotation confidence Not enough data

Genome context

chr10: 27860823-27860965 [-]

Mature cfa-miR-8827

• Accession: MIMAT0034319
• Description: Canis familiaris cfa-miR-8827 mature miRNA
• Sequence: 41 - UCCUCCUCGUGGUGAGCCUGGGCU - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545