Stem-loop cfa-mir-1249

Accession

MI0027912

Description

Canis lupus familiaris cfa-mir-1249 precursor miRNA

Sequence

32826 reads, 76.0 reads per million, 81 experiments

ucccagcucgccuuguccucagauucuuguuugcauggggAGGAGGGAGGAGAGGGGCCAAGUUCccuccgccuggaACGCCCUUCCCCCCCUUCUUCAccuggcgaacuccuacucguccuucaagacccagcucaag
....((((...((((......((.....((((((..(((((((((((.((.(((((((...(((((........)))))))))))).))))))))))).))..))))))......))......))))....))))....

Structure

uccc    -cgc    uccuca  -uucuu      au  -         A  A       CAA     cuc 
    agcu    cuug      ga      guuugc  gg ggAGGAGGG GG GAGGGGC   GUUCc   c
    ||||    ||||      ||      ||||||  || ||||||||| || |||||||   |||||    
    ucga    gaac      cu      caagcg  cc CUUCUUCCC CC CUUCCCG   CAagg   g
gaac    ccca    uuccug  cauccu      gu  A         -  C       ---     ucc 

Annotation confidence High

Genome context

10: 21553675-21553813 [+]

Mature cfa-miR-1249-5p

• Accession: MIMAT0051974
• Description: Canis lupus familiaris cfa-miR-1249-5p mature miRNA
• Sequence: 41 - AGGAGGGAGGAGAGGGGCCAAGUUC - 65
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-1249-3p

• Accession: MIMAT0034321
• Description: Canis lupus familiaris cfa-miR-1249-3p mature miRNA
• Sequence: 78 - ACGCCCUUCCCCCCCUUCUUCA - 99
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545