miRBase entry: cfa-mir-8793-3

Stem-loop cfa-mir-8793-3

Accession

MI0027939

Description

Canis familiaris cfa-mir-8793-3 precursor miRNA

Sequence

ccagcucgaucaccucuggcUCUGAAGCUUUAGCAGGCCCCGAGGuaggagcuggggccgguuguugaggugguucaggauauugcacaggggcagacacuaguu
............(((((((((((((((((((((((((((((.((.......))))))))...)))))))))..)))))).....)).))))))............

Structure

ccagcucgauca      -  -----      --         ---      G  Gu 
            ccucug gc     UCUGAA  GCUUUAGCA   GGCCCC AG  a
            |||||| ||     ||||||  |||||||||   |||||| ||  g
            ggggac cg     ggacuu  uggaguugu   ccgggg uc  g
uugaucacagac      a  uuaua      gg         ugg      -  ga

Annotation confidence Not enough data

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Genome context

chr16: 13946165-13946269 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-8793-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-8793

Accession	MIMAT0034283
Description	Canis familiaris cfa-miR-8793 mature miRNA
Sequence	21 - UCUGAAGCUUUAGCAGGCCCCGAGG - 45
Evidence	experimental Illumina [1]

References

PubMed ID: 24692655
Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
"Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
"Mol Biol Evol (2014) 31:1536-1545