miRBase entry: cfa-mir-8850

Stem-loop cfa-mir-8850


Accession
MI0027941
Description
Canis lupus familiaris cfa-mir-8850 precursor miRNA


Sequence

6 reads, 1.0 reads per million, 6 experiments
ggaugagggaaccagcacuuggagguuaagagcugugugaggucagguaauuaguguacugcucagugUGCAGCUGGGUUCUGGAACCAACacuucuucaucucaguggcuuaacccagca
......(((....((((((..(((((.(((((..((((..(((((((...(((((((((........))))).))))..))))..))).))))))))).)))))))).)))...)))....

Structure
ggauga   aacc   -   ug     u     cu    ga   --    uaa    -     ugc 
      ggg    agc acu  gaggu aagag  gugu  ggu  cagg   uuag uguac   u
      |||    ||| |||  ||||| |||||  ||||  |||  ||||   |||| |||||    
      ccc    ucg uga  cucua uucuu  caCA  CCA  GUCU   GGUC ACGUg   c
--acga   -aau   g   --     c     --    -A   AG    -UG    G     uga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
16: 19042582-19042702 [+]

Database links

Mature cfa-miR-8850-3p

Accession MIMAT0034345
Description Canis lupus familiaris cfa-miR-8850-3p mature miRNA
Sequence 69 - UGCAGCUGGGUUCUGGAACCAAC - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545