miRBase entry: cfa-mir-8853

Stem-loop cfa-mir-8853


Accession
MI0027944
Description
Canis lupus familiaris cfa-mir-8853 precursor miRNA


Sequence

116 reads, 12.0 reads per million, 13 experiments
acccgggcggggggcguuggggaagccgcggccuggaccgggacccacagcggcggcuccaccuggggcagggcUCUGACCCGCACUCGGCCUGCGGUaagcagcgccccacugcgcgaugggggcugagggc
.((((.(((((((((((((.....(((((((((.((..((((...((.(((....(((((....)))))...))).)).))))..)).)))).)))))...))))))))).)))).)...)))..........

Structure
---------a   --- g    -         gggaa     -    u  ac    acc  c   ggcg     a 
          ccc   g gcgg ggggcguug     gccgc ggcc gg  cggg   ca agc    gcucc c
          |||   | |||| |||||||||     ||||| |||| ||  ||||   || |||    |||||  
          ggg   c cguc ccccgcgac     UGGCG CCGG UC  GCCC   GU Ucg    cgggg c
cgggagucgg   uag g    a         --gaa     U    C  AC    --A  C   -gga     u 


Annotation confidence Not enough data
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Genome context
16: 1262048-1262180 [+]

Database links

Mature cfa-miR-8853-3p

Accession MIMAT0034348
Description Canis lupus familiaris cfa-miR-8853-3p mature miRNA
Sequence 75 - UCUGACCCGCACUCGGCCUGCGGU - 98
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545