Stem-loop cfa-mir-8856

Accession

MI0027947

Description

Canis lupus familiaris cfa-mir-8856 precursor miRNA

Sequence

30 reads, 2.0 reads per million, 13 experiments

aacaccauguuucagcucuggaauggaagacggugUGAGUACGGAGCUGGCUAGAGUGCggagcuggcugcugggcuucuauaacgggcgccgugggcacucgggugccguuucggaauucuuucuugggaua
....(((.(.......((((((((((....(((.(((..(((((.(((.(.(((((.((..(((.....)))..)))))))...).))).)))))..))))))....)))))))))).......).)))....

Structure

aaca   u uuucagc          aaga   u   AG     A   G --C     U  gg   u 
    cca g       ucuggaaugg    cgg gUG  UACGG GCU G   UAGAG GC  agc g
    ||| |       ||||||||||    ||| |||  ||||| ||| |   ||||| ||  ||| g
    ggu c       aggcuuugcc    gcu cac  gugcc cgg c   aucuu cg  ucg c
auag   u uuucuua          gugg   -   gg     g   g aau     -  gg   u 

Annotation confidence Not enough data

Genome context

16: 36841846-36841978 [+]

Mature cfa-miR-8856-5p

• Accession: MIMAT0034351
• Description: Canis lupus familiaris cfa-miR-8856-5p mature miRNA
• Sequence: 36 - UGAGUACGGAGCUGGCUAGAGUGC - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545