Stem-loop cfa-mir-8858

Accession

MI0027949

Description

Canis lupus familiaris cfa-mir-8858 precursor miRNA

Sequence

1433 reads, 5.0 reads per million, 69 experiments

aggguuauugaaaucgcggugugagcugucuuccgucuauaaauaugccucucccggguucugcugcaggcuuucaggcagcgagcgcagagacggcuggugagggaggagggacuGCUUAAGGCGACAGCAGAUAAGU
..(.(((((....((((....(((((.(((((((.(((....((..(((((((..(.((((.(((((..(....)..))))))))).).)))).)))..))...)))))).)))).)))))..)))).....))))).)

Structure

ag g     -gaaa    ggug     u    -   g   auaa  au   -    cc g    u     ag c 
  g uuauu     ucgc    ugagc gucu ucc ucu    au  gcc ucuc  g guuc gcugc  g u
  | |||||     ||||    ||||| |||| ||| |||    ||  ||| ||||  | |||| |||||  |  
  U AAUAG     AGCG    AUUCG cagg agg agg    ug  cgg agag  c cgag cgacg  c u
-- G     ACGAC    --GA     u    g   -   -gag  gu   c    -a g    -     ga u 

Annotation confidence Low

Genome context

18: 52744722-52744860 [-]

Mature cfa-miR-8858-3p

• Accession: MIMAT0034353
• Description: Canis lupus familiaris cfa-miR-8858-3p mature miRNA
• Sequence: 117 - GCUUAAGGCGACAGCAGAUAAGU - 139
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545