Stem-loop cfa-mir-8859a

Accession

MI0027950

Description

Canis lupus familiaris cfa-mir-8859a precursor miRNA

Sequence

71724 reads, 307.0 reads per million, 82 experiments

ggcucagucggggucggagccgggaucCGGAGUCCGCCUCGCGGUCCAGCGucguggauccgagucgUGGAUCGGAGCCGGGGUCCGGAguccgccucgcgguccagccucgugguucu
((((......(((((((((.((((.((((((.((((.(((.(((((((.((.(.((....)).).)))))))))))).)))).)))))).)))).))).))))))))))..........

Structure

----------    cagucg      -   c    a      G    C   G       G  u g  g 
          ggcu      gggucg gag cggg ucCGGA UCCG CUC CGGUCCA CG c ug a
          ||||      |||||| ||| |||| |||||| |||| ||| ||||||| || | ||  
          ccga      ccuggc cuc gccu AGGCCU GGGC GAG GCUAGGU gc g gc u
ucuuggugcu    ------      g   c    g      G    C   -       -  u a  c 

Annotation confidence Medium

Genome context

18: 47370417-47370535 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-8859a

Mature cfa-miR-8859a-5p

• Accession: MIMAT0051981
• Description: Canis lupus familiaris cfa-miR-8859a-5p mature miRNA
• Sequence: 28 - CGGAGUCCGCCUCGCGGUCCAGCG - 51
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-8859a-3p

• Accession: MIMAT0034354
• Description: Canis lupus familiaris cfa-miR-8859a-3p mature miRNA
• Sequence: 68 - UGGAUCGGAGCCGGGGUCCGGA - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545