Stem-loop cfa-mir-1343

Accession

MI0027953

Description

Canis lupus familiaris cfa-mir-1343 precursor miRNA

Sequence

51748 reads, 109.0 reads per million, 81 experiments

accaacgaugaugcuggcuucggugcUGGGGAGCGGCCCCCGGGCGGgccucugcucuggcccCUCCUGGGGCCCGCACUCUCGCUccgggcccgcuccaccucggcugcu
.....(((((..((.((((.(((.((.((((.((((.(((((((.(((((........)))))..))))))).)))).)))).)).))))))).))..))..)))......

Structure

-accaa   --  au  u    u   u  U    A    C       -C     ucu 
      cga  ug  gc ggcu cgg gc GGGG GCGG CCCCGGG  GGgcc   g
      |||  ||  || |||| ||| || |||| |||| |||||||  |||||    
      gcu  ac  cg ccgg gcc CG UCUC CGCC GGGGUCC  cccgg   c
ucgucg   cc  cu  c    -   U  C    A    C       UC     ucu 

Annotation confidence High

Genome context

18: 33600986-33601096 [-]

Mature cfa-miR-1343-5p

• Accession: MIMAT0051982
• Description: Canis lupus familiaris cfa-miR-1343-5p mature miRNA
• Sequence: 27 - UGGGGAGCGGCCCCCGGGCGG - 47
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-1343-3p

• Accession: MIMAT0034357
• Description: Canis lupus familiaris cfa-miR-1343-3p mature miRNA
• Sequence: 64 - CUCCUGGGGCCCGCACUCUCGCU - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545