Stem-loop cfa-mir-8870

Accession

MI0027963

Description

Canis lupus familiaris cfa-mir-8870 precursor miRNA

Sequence

7 reads, 2.0 reads per million, 5 experiments

cugacugucauggaugcgauucgaagcuguggguuccuggcgucgagcgugggcuggucccgccucuggaccUGCCUCUGCAACCCCAUGGUCCccacuuugcagccagacggcaagagccucagauca
((((..(((.(((.(((((.........(((((..(((((.((...(((.((((.(((((.......))))).)))).))).)).))).))..))))).))))).))))))(((....)))))))....

Structure

----    --------cu   a   a     uucgaagcu     uu  -   c  cga   u    u     cg 
    cuga          guc ugg ugcga         guggg  cc ugg gu   gcg gggc ggucc  c
    ||||          ||| ||| |||||         |||||  || ||| ||   ||| |||| |||||  c
    gacu          cag acc acguu         caccC  GG ACC CA   CGU UCCG ccagg  u
acua    ccgagaacgg   -   g     --------u     CU  U   C  --A   C    U     uc 

Annotation confidence Not enough data

Genome context

5: 31104025-31104153 [-]

Mature cfa-miR-8870-5p

• Accession: MIMAT0034367
• Description: Canis lupus familiaris cfa-miR-8870-5p mature miRNA
• Sequence: 73 - UGCCUCUGCAACCCCAUGGUCC - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545