Stem-loop cfa-mir-8871

Accession

MI0027964

Description

Canis lupus familiaris cfa-mir-8871 precursor miRNA

Sequence

41 reads, 0.0 reads per million, 24 experiments

gcgaguguggcagguugaggauguacugccaaaagugaccUAAUGCAUGUUGGUCUGCUGCCUACauauucuaggcugccaugggcaguggucugacgcccacuuagggucuuuuuggggggcaucugucuaaaccugaaucuuc
..(((.....((((((..((((((.((.(((((((.(((((((((..((((((.((((((((((.................)))))))))).))))))..)).))).))))))))))).)))))))).....))))))...))).

Structure

gc   ugugg      ---ga      a  g       u    -   -  CA      U          Cauauuc 
  gag     cagguu     ggaugu cu ccaaaag gacc UAA UG  UGUUGG CUGCUGCCUA       u
  |||     ||||||     |||||| || ||||||| |||| ||| ||  |||||| ||||||||||       a
  uuc     guccaa     ucuacg gg gguuuuu cugg auu ac  gcaguc ggugacgggu       g
-c   --uaa      aucug      -  g       -    g   c  cc      u          accgucg 

Annotation confidence Not enough data

Genome context

5: 16364923-16365067 [-]

Mature cfa-miR-8871-5p

• Accession: MIMAT0034368
• Description: Canis lupus familiaris cfa-miR-8871-5p mature miRNA
• Sequence: 41 - UAAUGCAUGUUGGUCUGCUGCCUAC - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545