Stem-loop cfa-mir-2387

Accession

MI0027966

Description

Canis lupus familiaris cfa-mir-2387 precursor miRNA

Sequence

15377 reads, 79.0 reads per million, 82 experiments

cggggagcacgggggcgagaggccggccaggcggagcguggagggccUGGAAGGCCUGGCUUUGCAGCGUguucuggacUCUGCAGACCCGGCCUUGGCAAgcucuuccgcugacguccccgcggccggagccccagcgcccc
.((((.((...(((((....(((((....((((.((((.(((((((.((.((((((.((.(((((((.((.......)).))))))))).))))))..)).)))))))))))..))))....)))))...))))).)).))))

Structure

c    a  acg     gaga     gcca    -g    u       c  -G      U  C       C  gu 
 gggg gc   ggggc    ggccg    ggcg  agcg ggagggc UG  AAGGCC GG UUUGCAG GU  u
 |||| ||   |||||    |||||    ||||  |||| ||||||| ||  |||||| || ||||||| ||  c
 cccc cg   ccccg    ccggc    cugc  ucgc cuucucg AC  UUCCGG CC AGACGUC ca  u
-    g  --a     -agg     gccc    ag    -       A  GG      C  -       U  gg 

Annotation confidence High

Genome context

6: 5726087-5726228 [-]

Mature cfa-miR-2387-5p

• Accession: MIMAT0051985
• Description: Canis lupus familiaris cfa-miR-2387-5p mature miRNA
• Sequence: 48 - UGGAAGGCCUGGCUUUGCAGCGU - 70
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-2387-3p

• Accession: MIMAT0034370
• Description: Canis lupus familiaris cfa-miR-2387-3p mature miRNA
• Sequence: 80 - UCUGCAGACCCGGCCUUGGCAA - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545