Stem-loop cfa-mir-8875

Accession

MI0027971

Description

Canis lupus familiaris cfa-mir-8875 precursor miRNA

Sequence

2080 reads, 10.0 reads per million, 77 experiments

aaaaaaaaaaaaaaaggccccaggccuugcgcucccggccUGCUGUAGCGGAACCCGGGGCGGGCguugccuagaaacgcaucauugucuuuggguucuuagccuugcgcaggcagcaguucugggacacuuggcgggguagucc
................(((((..(((..(.(.((((((.(((((((.(((((((((((((((((((((.......)))))....))))).)))))))).........)))..)))))))..))))))).)..)))))))).....

Structure

aaaaaaaaaaaaaaag     ag   uu c c      -c       -A   ---------        -     ----     gc 
                gcccc  gcc  g g ucccgg  cUGCUGU  GCG         GAACCCGG GGCGG    GCguu  c
                |||||  |||  | | ||||||  |||||||  |||         |||||||| |||||    |||||  u
                ugggg  cgg  c c aggguc  gacgacg  cgc         cuuggguu cuguu    cgcaa  a
-----------ccuga     --   uu a -      uu       ga   guuccgauu        u     acua     ag 

Annotation confidence Not enough data

Genome context

6: 21221810-21221954 [-]

Mature cfa-miR-8875-5p

• Accession: MIMAT0034375
• Description: Canis lupus familiaris cfa-miR-8875-5p mature miRNA
• Sequence: 41 - UGCUGUAGCGGAACCCGGGGCGGGC - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545