Stem-loop cfa-mir-8876

Accession

MI0027972

Description

Canis lupus familiaris cfa-mir-8876 precursor miRNA

Sequence

1185 reads, 4.0 reads per million, 70 experiments

ggcagccgcggggucgguggcccuuagcgaggccugcAGUGGCCAAGUGGGAGGCACCCcgcugauugggagCUGCCUCUGGCUUGGCCUGCAGgugugcuggacagugccacaggugacucucugaca
..(((....((((((((((((.((((((.(.(((((((..((((((((.((((((((((((.....)))).).))))))).))))))))))))))).)))))...)).)))))...))))))))))...

Structure

-gg   ccgc       ---     c  ---    g g       GU        G       - -    c 
   cag    ggggucg   guggc cu   uagc a gccugcA  GGCCAAGU GGAGGCA C CCcg u
   |||    |||||||   ||||| ||   |||| | |||||||  |||||||| ||||||| | |||| g
   guc    ucucagu   caccg ga   gucg u ugGACGU  CCGGUUCG UCUCCGU g gggu a
aca   ----       gga     u  cag    - g       --        G       C a    u 

Annotation confidence Medium

Genome context

6: 14643608-14643736 [-]

Mature cfa-miR-8876-5p

• Accession: MIMAT0051986
• Description: Canis lupus familiaris cfa-miR-8876-5p mature miRNA
• Sequence: 38 - AGUGGCCAAGUGGGAGGCACCC - 59
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-8876-3p

• Accession: MIMAT0034376
• Description: Canis lupus familiaris cfa-miR-8876-3p mature miRNA
• Sequence: 73 - CUGCCUCUGGCUUGGCCUGCAG - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545