Stem-loop cfa-mir-8879

Accession

MI0027975

Description

Canis lupus familiaris cfa-mir-8879 precursor miRNA

Sequence

791 reads, 4.0 reads per million, 72 experiments

gacuugaucccaggaccccgggagcacgaccugagccaaaggcagacccaaccacugaggcacccaggcaucccuagcUACUCAUUCCUCUGUCUUGGGCUugugccuccccacaugcagcauccuggccccaccaaggua
..((((...((((((....((((((((.....(((((.((((((((.........((((....(.(((....))).)...))))....)))))))).)))))))).)))))...........))))))......))))...

Structure

-ga    ---auc      -------cccc     -   gaccu     a        cccaaccac    gcac c   c 
   cuug      ccagga           gggag cac     gagcc aaggcaga         ugag    c agg a
   ||||      ||||||           ||||| |||     ||||| ||||||||         ||||    | |||  
   gaac      gguccu           cccuc gug     uUCGG UUCUGUCU         ACUC    g ucc u
aug    cacccc      acgacguacac     c   -----     G        -----CCUU    -AUc a   c 

Annotation confidence Not enough data

Genome context

6: 15948153-15948293 [+]

Mature cfa-miR-8879-3p

• Accession: MIMAT0034379
• Description: Canis lupus familiaris cfa-miR-8879-3p mature miRNA
• Sequence: 79 - UACUCAUUCCUCUGUCUUGGGCU - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545