Stem-loop cfa-mir-8880

Accession

MI0027977

Description

Canis lupus familiaris cfa-mir-8880 precursor miRNA

Sequence

18 reads, 2.0 reads per million, 11 experiments

ucugggaugggguucaggggcugcguguuucucuaucggccauggacucugcccuguuucuggaaggacaugggGCAAGUCAGCCCUGUGGACAAACAuuucuccuuauccugucccagugccagcuccacgg
.((((((((((((..(((((....((((((.(((((.(((....((((.((((((((.(((....))).)))))))))))).)))..))))).))))))..))))).))))))))))))..............

Structure

-------------u            uc     cugc      c     -c   caug    c        u   g 
              cugggauggggu  agggg    guguuu ucuau  ggc    gacu ugcccugu ucu g
              ||||||||||||  |||||    |||||| |||||  |||    |||| |||||||| |||  
              gacccuguccua  uccuc    uACAAA AGGUG  CCG    CUGA ACGgggua agg a
ggcaccucgaccgu            -u     --uu      C     UC   ---A    -        c   a 

Annotation confidence Not enough data

Genome context

13: 40745881-40746013 [-]

Mature cfa-miR-8880-3p

• Accession: MIMAT0034380
• Description: Canis lupus familiaris cfa-miR-8880-3p mature miRNA
• Sequence: 75 - GCAAGUCAGCCCUGUGGACAAACA - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545