Stem-loop cfa-mir-7180

Accession

MI0027979

Description

Canis lupus familiaris cfa-mir-7180 precursor miRNA

Sequence

40645 reads, 52.0 reads per million, 80 experiments

aggcugaggauugguggucucagggAGUGUACUUCCUGGGGCCUCUGGgcauauaauuccUGUGGCCUCUGGGUGUGUACCCUcuguggcuuccagguucaug
....((((..((((.((((.(((((.((((((.(((.((((((.(.(((........))).).)))))).))).)))))).))))).)))).)))).))))..

Structure

aggc    ga    u    u     A      U   U      U U   cau 
    ugag  uugg gguc caggg GUGUAC UCC GGGGCC C GGg   a
    ||||  |||| |||| ||||| |||||| ||| |||||| | |||    
    acuu  gacc ucgg gucUC CAUGUG GGG CUCCGG G ccu   u
--gu    -g    u    u     C      U   U      U U   uaa 

Annotation confidence High

Genome context

7: 35825418-35825520 [+]

Mature cfa-miR-7180-5p

• Accession: MIMAT0051987
• Description: Canis lupus familiaris cfa-miR-7180-5p mature miRNA
• Sequence: 26 - AGUGUACUUCCUGGGGCCUCUGG - 48
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-7180-3p

• Accession: MIMAT0034382
• Description: Canis lupus familiaris cfa-miR-7180-3p mature miRNA
• Sequence: 61 - UGUGGCCUCUGGGUGUGUACCCU - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545