Stem-loop cfa-mir-1185

Accession

MI0027980

Description

Canis lupus familiaris cfa-mir-1185 precursor miRNA

Literature search

1 open access papers mention cfa-mir-1185
(1 sentences)

Sequence

19650 reads, 85.0 reads per million, 76 experiments

gguccucacuggagcugcucuuugguacuugaagAGAGGAUACCCUUUGUAUGUUCacuuuauuaauggcgaAUAUACAGGGGGAGACUCUUAUUugcguaucaaacucugaccgggaaggcgcucgga
(.(((.....))).).....((((((((.(((((((((..(.((((((((((((((.((........)).)))))))))))))))..))))).)))).))))))))......(((((......))))).

Structure

---gguccucacuggagcugcuc        u    -     GA A              a  uua 
                       uuugguac ugaa gAGAG  U CCCUUUGUAUGUUC cu   u
                       |||||||| |||| |||||  | |||||||||||||| ||    
                       aaacuaug guUU UUCUC  A GGGGGACAUAUAag gg   u
aggcucgcggaagggccagucuc        c    A     AG -              c  uaa 

Annotation confidence High

Genome context

8: 69554850-69554978 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from cfa-mir-1185

Mature cfa-miR-1185-5p

• Accession: MIMAT0051988
• Description: Canis lupus familiaris cfa-miR-1185-5p mature miRNA
• Sequence: 35 - AGAGGAUACCCUUUGUAUGUUC - 56
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-1185-3p

• Accession: MIMAT0034383
• Description: Canis lupus familiaris cfa-miR-1185-3p mature miRNA
• Sequence: 73 - AUAUACAGGGGGAGACUCUUAUU - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545