Stem-loop cfa-mir-8883

Accession

MI0027982

Description

Canis familiaris cfa-mir-8883 precursor miRNA

Sequence

gaaaggaccggaguugcugaggaggaaugccucuggagauUCUGGGUGAGGAUUCGCAGGACUUUuguggcauguguugacaggagggccucggagguuugagucacuucaccugaacgagccugcgucucugcugagccccgcc
........(((.(..(((.((.(((.((((..((.(...(((.(((((((((((((...((((((((.(((.(.((....)).)...))).)))))))))))))).).)))))))))).))...)))).))).)).)))))))..

Structure

gaaaggac   a uu   g  g   a    -cu  g aga   U      - -      CAG        u   --a g  u 
        cgg g  gcu ag agg augc   cu g   uUC GGGUGA G GAUUCG   GACUUUug ggc   u ug u
        ||| |  ||| || ||| ||||   || |   ||| |||||| | ||||||   |||||||| |||   | ||  
        gcc c  cga uc ucu ugcg   ga c   aag uccacu c cugagu   uuggaggc ccg   g ac g
------cc   - --   g  g   c    ucc  g ---   -      u a      ---        u   gga g  a 

Annotation confidence Not enough data

Genome context

chr8: 32848208-32848352 [+]

Mature cfa-miR-8883

• Accession: MIMAT0034385
• Description: Canis familiaris cfa-miR-8883 mature miRNA
• Sequence: 41 - UCUGGGUGAGGAUUCGCAGGACUUU - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545