Stem-loop cfa-mir-8885

Accession

MI0027987

Description

Canis familiaris cfa-mir-8885 precursor miRNA

Sequence

cuuuuagucuguucucuggggaggcgguaaggggccguggagcuggccucggcaccgggagaggcuggacuuccugucucUCUGUGCUGAAUGGCUGCGAUGGCGcccgcucucacugacgcagcagcugaagcacaccauaucc
.((((((.(((((...(.(((((((((....(.(((((.((((((...(((((((..((((((((.((....)).))))))))))))))).))))).).))))).))))).))).)).)...)))))))))))............

Structure

-----------c      u     cuc g  -   -    uaag g     g -     gcc       cg        u  a 
            uuuuag cuguu   u gg gag gcgg    g gccgu g agcug   ucggcac  ggagaggc gg c
            |||||| |||||   | || ||| ||||    | ||||| | |||||   |||||||  |||||||| ||  
            gaaguc gacga   a uc cuc cgcc    c CGGUA C UCGGU   AGUCGUG  UCUcucug cc u
ccuauaccacac      -     cgc g  a   u    ---- G     G G     --A       --        u  u 

Annotation confidence Not enough data

Genome context

chr9: 9429575-9429719 [+]

Mature cfa-miR-8885

• Accession: MIMAT0034389
• Description: Canis familiaris cfa-miR-8885 mature miRNA
• Sequence: 81 - UCUGUGCUGAAUGGCUGCGAUGGCG - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545