Stem-loop cfa-mir-8888

Accession

MI0027990

Description

Canis lupus familiaris cfa-mir-8888 precursor miRNA

Sequence

7 reads, 8.0 reads per million, 5 experiments

ggcagccagagucuggccuccuguagcuguuccaucaguggaugcagacuuaaccagugcccaaugcaUACUGGUUAAUUUCAACUCCACUggucacagggaagggagacuuugguaggag
....((((((((((..(((((.....((((...(((((((((((.(((.(((((((((((.....))..))))))))))))))..))))))))).)))))).))).)))))))))).....

Structure

-ggca          gg   -  uguag    ucc         --  c   c         --  c 
     gccagagucu  ccu cc     cugu   aucagugga  ug aga uuaaccagu  gc c
     ||||||||||  ||| ||     ||||   |||||||||  || ||| |||||||||  || a
     ugguuucaga  gga gg     gaca   uggUCACCU  AC UUU AAUUGGUCA  cg a
gagga          -g   a  -----    --c         CA  -   -         Ua  u 

Annotation confidence Not enough data

Genome context

9: 22948813-22948933 [-]

Mature cfa-miR-8888-3p

• Accession: MIMAT0034392
• Description: Canis lupus familiaris cfa-miR-8888-3p mature miRNA
• Sequence: 69 - UACUGGUUAAUUUCAACUCCACU - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545