Stem-loop cfa-let-7d

Accession

MI0027994

Description

Canis lupus familiaris cfa-let-7d precursor miRNA

Literature search

14 open access papers mention cfa-let-7d
(92 sentences)

Sequence

320229 reads, 544.0 reads per million, 82 experiments

aaauggguuccuaggaAGAGGUAGUAGGUUGCAUAGUUuuagggcagggauuuugcccacaaggagguaaCUAUACGACCUGCUGCCUUUCUuagggccuuauuacuccacgguaaccugcucuu
....((((.(((((((.((((((((((((((.((((((...((((((.....))))))..........)))))).)))))))))))))))))))))))))..(((((....))))).........

Structure

---------------------aaau    u       A              C      -------uua      g 
                         gggu ccuagga GAGGUAGUAGGUUG AUAGUU          gggcag g
                         |||| ||||||| |||||||||||||| ||||||          |||||| a
                         uccg ggauUCU UUCCGUCGUCCAGC UAUCaa          cccguu u
uucucguccaauggcaccucauuau    -       -              A      uggaggaaca      u 

Annotation confidence High

Genome context

1: 98519286-98519410 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-let-7d

Mature cfa-let-7d-5p

• Accession: MIMAT0051993
• Description: Canis lupus familiaris cfa-let-7d-5p mature miRNA
• Sequence: 17 - AGAGGUAGUAGGUUGCAUAGUU - 38
• Evidence: experimental ; Illumina [1]

Mature cfa-let-7d-3p

• Accession: MIMAT0034396
• Description: Canis lupus familiaris cfa-let-7d-3p mature miRNA
• Sequence: 71 - CUAUACGACCUGCUGCCUUUCU - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545