Stem-loop cfa-mir-8892

Accession

MI0027997

Description

Canis lupus familiaris cfa-mir-8892 precursor miRNA

Sequence

9 reads, 1.0 reads per million, 7 experiments

gauucaaaggucagcuccaagguuccgaacuggggcccgggaugugagggguuucagagccuaaauucccUAGUCUGUAGCCCCGGCCCCCGAAUcccacccgagcggggccuuccuuuucccaa
.....(((((...(((((...((((.(...(((((..((((..((..((((((.((((..(((.......))))))).)))))).)).))))..))))).).)))))))))...)))))......

Structure

-gauuc     uca     aag    c aac     cc    au  ga      u    gc   aa 
      aaagg   gcucc   guuc g   ugggg  cggg  gu  gggguu caga  cua  u
      |||||   |||||   |||| |   |||||  ||||  ||  |||||| ||||  |||  u
      uuucc   cgggg   cgag c   acccU  GCCC  CG  CCCCGA GUCU  GAU  c
aacccu     uuc     ---    c --c     AA    -C  -G      U    --   cc 

Annotation confidence Not enough data

Genome context

1: 113629963-113630087 [+]

Mature cfa-miR-8892-3p

• Accession: MIMAT0034399
• Description: Canis lupus familiaris cfa-miR-8892-3p mature miRNA
• Sequence: 71 - UAGUCUGUAGCCCCGGCCCCCGAAU - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545