Stem-loop cfa-mir-8893

Accession

MI0027999

Description

Canis lupus familiaris cfa-mir-8893 precursor miRNA

Sequence

5 reads, 1.0 reads per million, 4 experiments

aggagcuugcagcggcacgcugggaacggcucuaauggagaggggagugcggugcucugguccccaCACUGCAGCCUGGGCUCUGGUgcuggcacacagcccccgccaacgcuucag
.((((((((..((((...(((((...((((.((...((((...((..(((((((...(((...))))))))))..))...)))))).))))...).))))..))))))).)))))..

Structure

-a     -   ca    cac    - gaa    u  aau    agg  ag       cuc   u 
  ggagc uug  gcgg   gcug g   cggc cu   ggag   gg  ugcggug   ugg  
  ||||| |||  ||||   |||| |   |||| ||   ||||   ||  |||||||   ||| c
  cuucg aac  cgcc   cgac c   gucg GG   UCUC   UC  ACGUCAC   acc  
ga     c   --    -cc    a acg    U  ---    GGG  CG       ---   c 

Annotation confidence Not enough data

Genome context

1: 99220921-99221037 [+]

Mature cfa-miR-8893-3p

• Accession: MIMAT0034401
• Description: Canis lupus familiaris cfa-miR-8893-3p mature miRNA
• Sequence: 67 - CACUGCAGCCUGGGCUCUGGU - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545