Stem-loop cfa-mir-8894

Accession

MI0028000

Description

Canis familiaris cfa-mir-8894 precursor miRNA

Sequence

gggagugggggugggggcugcugucgcugcugggaUCCGAAGCUUCUGAGGCUCUUGGCCgucggggcacugcgcgcagugggagcuuccccguggggcuuccugggccugcuguagcaggaggccucacccacc
......((((((((((.((.((((.((.((.(((.(((((((((((.(((((((((.((((.(((....))))).))...))))))))).....))))))))..)))))))).)).)))).)).)))))))).))

Structure

gggagu  -        g  g    c  u  u   a   --        ----U         --G  -  u   g 
      gg gggugggg cu cugu gc gc ggg UCC  GAAGCUUC     GAGGCUCUU   GC Cg cgg g
      || |||||||| || |||| || || ||| |||  ||||||||     |||||||||   || || |||  
      cc cccacucc ga gacg ug cg ucc ggg  cuucgggg     cuucgaggg   cg gc guc c
------  a        g  g    a  u  -   -   uc        ugccc         uga  c  -   a 

Annotation confidence Not enough data

Genome context

chr2: 84472247-84472381 [-]

Mature cfa-miR-8894

• Accession: MIMAT0034402
• Description: Canis familiaris cfa-miR-8894 mature miRNA
• Sequence: 36 - UCCGAAGCUUCUGAGGCUCUUGGCC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545