Stem-loop cfa-mir-8813-2

Accession

MI0028003

Description

Canis lupus familiaris cfa-mir-8813-2 precursor miRNA

Sequence

106 reads, 7.0 reads per million, 12 experiments

ucccagggugcuuugcacagACCCUGGUGACCUGAGGUUCCCcggcugucacucugucccaggcccguccuggccccaggCACAGGCUGAGUCGCAGUAGAGUCUgugggguccugacccuggcgucuggccgccccuggaaggc
..((((((.((...((.(((((((.((.(...(.(((..((((((((((.((((.......((((.((((((....)))).)).)))))))).)))))........))))).))).)))).)).))))))).)))))))).....

Structure

---uc      u  uuu  a     -  U  U ACC G   UU     --------     c    uguccca    c  -    g 
     ccaggg gc   gc cagAC CC GG G   U AGG  CCCcg        gcugu acuc       ggcc gu ccug c
     |||||| ||   || ||||| || || |   | |||  |||||        ||||| ||||       |||| || ||||  
     gguccc cg   cg gucug gg cc c   a ucc  ggggu        UGACG UGAG       UCGG CA ggac c
cggaa      -  --c  -     c  u  - --- g   -u     gUCUGAGA     C    -------    A  C    c 

Annotation confidence Not enough data

Genome context

2: 57941658-57941802 [+]

Mature cfa-miR-8813-2-5p

• Accession: MIMAT0051996
• Description: Canis lupus familiaris cfa-miR-8813-2-5p mature miRNA
• Sequence: 21 - ACCCUGGUGACCUGAGGUUCCC - 42
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-8813-3p

• Accession: MIMAT0034303
• Description: Canis lupus familiaris cfa-miR-8813-3p mature miRNA
• Sequence: 81 - CACAGGCUGAGUCGCAGUAGAGUCU - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545