Stem-loop cfa-mir-8896

Accession

MI0028005

Description

Canis lupus familiaris cfa-mir-8896 precursor miRNA

Sequence

24 reads, 1.0 reads per million, 12 experiments

cuccccguguucgcaggaaggaaauUUCGGGCAAGCUGGGAGGCAGAGugcucuugcuucugcccauucugagagugcuccuuuugcagccccugacuugccucacagggc
..(((.(((...(((((.(((.......(((((..((.((((((((((.((....)))))))))...))).))..)))))...........)))..)))))..))).))).

Structure

cu   c   uuc     -a   ----aaauUUC     AG  G   ---       u  u 
  ccc gug   gcagg  agg           GGGCA  CU GGA   GGCAGAG gc c
  ||| |||   |||||  |||           |||||  || |||   ||||||| ||  
  ggg cac   cguuc  ucc           cucgu  ga ucu   ccgucuu cg u
-c   a   -uc     ag   ccgacguuuuc     ga  g   uac       -  u 

Annotation confidence Not enough data

Genome context

gb|JAAUVH010000294.1|: 380035-380145 [-]

Mature cfa-miR-8896-5p

• Accession: MIMAT0034404
• Description: Canis lupus familiaris cfa-miR-8896-5p mature miRNA
• Sequence: 26 - UUCGGGCAAGCUGGGAGGCAGAG - 48
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545