Stem-loop cfa-mir-8897

Accession

MI0028006

Description

Canis familiaris cfa-mir-8897 precursor miRNA

Sequence

ggugcucagccacgcuacaagaggcgggccuaguuugcggcaucuaauuggcagagcguugggcgagcuuugcucgcugaUUGGUCGAGGUAGCUGCCGGAAAGGgcccagccuugagaugggagagcggaggcguucugugggc
.........((((.((((..(((((((((((..(((.(((((.(((.(((((....((.(.(((((((...))))))).).)))))))..))).))))).))))))))).)))))..).))).((((((....))))))))))..

Structure

ggugcucag    ----------------g   - aa     -      ag   g     u   -a     agag  u g       u 
         ccac                 cua c  gaggc gggccu  uuu cggca cua  uuggc    cg u ggcgagc  
         ||||                 ||| |  ||||| ||||||  ||| ||||| |||  |||||    || | ||||||| u
         ggug                 ggu g  uuccg cccgGG  AAA GCCGU GAU  AGCUG    GU a ucgcucg  
-------cg    ucuugcggaggcgagag   a ag     a      --   G     C   GG     ----  U g       u 

Annotation confidence Not enough data

Genome context

chr2: 76050573-76050717 [+]

Mature cfa-miR-8897

• Accession: MIMAT0034405
• Description: Canis familiaris cfa-miR-8897 mature miRNA
• Sequence: 81 - UUGGUCGAGGUAGCUGCCGGAAAGG - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545