Stem-loop cfa-mir-449b

Accession

MI0028007

Description

Canis lupus familiaris cfa-mir-449b precursor miRNA

Literature search

1 open access papers mention cfa-mir-449b
(1 sentences)

Sequence

884 reads, 12.0 reads per million, 44 experiments

gccaugaaacguagccgugaccugagucagguAGGCAGUGUAUUGUUAGCUGGCUGcuuugggucaaucuggCAGCCACCACUACCCUGCCACUUGcuucuggacaaauucuucucauuaacaggcugc
..........((((((((((((.(((.(((((.(((((.(((.((...(.((((((((..((.....)).))))))))))).))).)))))))))).))).))...........)))).....))))))

Structure

gccaugaaac      -----    -----------  u   u     A     U   U  UUA C        uu  g 
          guagcc     guga           cc gag caggu GGCAG GUA UG   G UGGCUGcu  gg u
          ||||||     ||||           || ||| ||||| ||||| ||| ||   | ||||||||  || c
          cgucgg     uacu           gg cuu GUUCA CCGUC CAU AC   C ACCGACgg  cu a
----------      acaau    cuucuuaaaca  u   c     -     C   C  --- -        -u  a 

Annotation confidence High

Genome context

2: 43004082-43004210 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-449b

Mature cfa-miR-449b-5p

• Accession: MIMAT0051998
• Description: Canis lupus familiaris cfa-miR-449b-5p mature miRNA
• Sequence: 33 - AGGCAGUGUAUUGUUAGCUGGCUG - 56
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-449b-3p

• Accession: MIMAT0034406
• Description: Canis lupus familiaris cfa-miR-449b-3p mature miRNA
• Sequence: 73 - CAGCCACCACUACCCUGCCACUUG - 96
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545