Stem-loop cfa-mir-8900

Accession

MI0028011

Description

Canis lupus familiaris cfa-mir-8900 precursor miRNA

Sequence

21 reads, 1.0 reads per million, 10 experiments

agggugggugaaacagccuuacgucagaagaggaccuggcUAGGACUUUAAUGGCUGGAGAGAagucagugccuggcuucaauucuucaaggcuuggacagagggacucuucuguaggggugcacacagcugcugacuuuu
..(((((.((...((.((((((...(((((((..(((..(((((.(((.......((((((((((((((...))))))))...))))))))))))))....)))..))))))))))))).))....)).))))).......

Structure

-----ag     g  -aaa  g      guc       ga   --gg     A   UAAUGGC      ---        u 
       ggugg ug    ca ccuuac   agaagag  ccu    cUAGG CUU       UGGAGA   GAagucag  
       ||||| ||    || ||||||   |||||||  |||    ||||| |||       ||||||   |||||||| g
       ucguc ac    gu gggaug   ucuucuc  gga    gguuc gga       acuucu   cuucgguc  
uuuucag     g  acac  g      ---       ag   gaca     -   -------      uaa        c 

Annotation confidence Not enough data

Genome context

3: 58852999-58853139 [-]

Mature cfa-miR-8900-5p

• Accession: MIMAT0034410
• Description: Canis lupus familiaris cfa-miR-8900-5p mature miRNA
• Sequence: 41 - UAGGACUUUAAUGGCUGGAGAGA - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545