miRBase entry: cfa-mir-1296

Stem-loop cfa-mir-1296


Accession
MI0028014
Description
Canis lupus familiaris cfa-mir-1296 precursor miRNA


Sequence

21200 reads, 59.0 reads per million, 79 experiments
ugaaaucagcgaauaaccuaccuaacuggaUUAGGGCCCUGGCUCCAUCUCCUUuaggaaaaccuucuguggggAGUGGGGCUUUGACCCUAACCcagcugggcuguaacacugcugcauuuucu
.((((((((((......(..((((.((((.((((((....(((((((.((((((..((((....))))..)))))))))))))....)))))).)))).))))..)......))))).)))))..

Structure
-u     -     aauaac ua    a    a      CCCU       U      ua    a 
  gaaau cagcg      c  ccua cugg UUAGGG    GGCUCCA CUCCUU  ggaa a
  ||||| |||||      |  |||| |||| ||||||    ||||||| ||||||  ||||  
  uuuua gucgu      g  gggu gacC AAUCCC    UCGGGGU GAgggg  ucuu c
uc     c     cacaau uc    c    C      AGUU       -      ug    c 


Annotation confidence High
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Genome context
4: 15444739-15444863 [-]

Database links

Mature cfa-miR-1296-5p

Accession MIMAT0034413
Description Canis lupus familiaris cfa-miR-1296-5p mature miRNA
Sequence 31 - UUAGGGCCCUGGCUCCAUCUCCUU - 54
Evidence experimental
Illumina [1]

Mature cfa-miR-1296-3p

Accession MIMAT0052001
Description Canis lupus familiaris cfa-miR-1296-3p mature miRNA
Sequence 75 - AGUGGGGCUUUGACCCUAACC - 95
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545