Stem-loop cfa-mir-8903

Accession

MI0028015

Description

Canis lupus familiaris cfa-mir-8903 precursor miRNA

Sequence

2744 reads, 7.0 reads per million, 73 experiments

cacaccagaauuaccuggggagauuauuaaaaauacagauUCUUGGGCCCCACCCCCGGAGAcugugaaucaguaagUAGAUCUGGGGUAGGGCCUGGGAauuuguauuuuuaaacaacuaacuucaggugauucugaugcca
..((.(((((((((((((((((....((((((((((((((((((((((((...(((((((.((((.....)))).......)))))))..))))))))))))))))))))))))....))..))))))))))))))).))...

Structure

-ca  c               --  auua                        CAC       ------G    u 
   ca cagaauuaccugggg  ag    uuaaaaauacagauUCUUGGGCCC   CCCCGGA       Acug g
   || |||||||||||||||  ||    ||||||||||||||||||||||||   |||||||       |||| a
   gu gucuuaguggacuuc  uc    aauuuuuauguuuaAGGGUCCGGG   GGGGUCU       ugac a
acc  a               aa  aaca                        -AU       AGAUgaa    u 

Annotation confidence High

Genome context

4: 76349982-76350124 [+]

Mature cfa-miR-8903-5p

• Accession: MIMAT0034414
• Description: Canis lupus familiaris cfa-miR-8903-5p mature miRNA
• Sequence: 41 - UCUUGGGCCCCACCCCCGGAGA - 62
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-8903-3p

• Accession: MIMAT0052002
• Description: Canis lupus familiaris cfa-miR-8903-3p mature miRNA
• Sequence: 78 - UAGAUCUGGGGUAGGGCCUGGGA - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545