Stem-loop cfa-mir-8908b

Accession

MI0028016

Description

Canis lupus familiaris cfa-mir-8908b precursor miRNA

Sequence

10222 reads, 50.0 reads per million, 47 experiments

cuguccgccaugaacgaugcugugugcagugcuuUAUUCAGGGAGGUGCUAAUGACgucaccuuagaguGAUUAGUUCCUGCCUGGAUACAggaaugcucacaaagaacggcuuuugcagu
((((..(((...........((((.(((.(.((.((((((((.(((.((((((.((.((......)))).)))))).))).)))))))).)).).))).))))......)))....)))).

Structure

-    --cc   augaacgaugc    u   g g  u        G   U      G  g  ac 
 cugu    gcc           ugug gca u cu UAUUCAGG AGG GCUAAU AC uc  c
 ||||    |||           |||| ||| | || |||||||| ||| |||||| || ||   
 gacg    cgg           acac cgu a gA AUAGGUCC UCC UGAUUA ug ag  u
u    uuuu   -----caagaa    u   a g  C        G   U      G  -  au 

Annotation confidence High

Genome context

X: 116699351-116699471 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-8908b

Mature cfa-miR-8908b-5p

• Accession: MIMAT0052003
• Description: Canis lupus familiaris cfa-miR-8908b-5p mature miRNA
• Sequence: 35 - UAUUCAGGGAGGUGCUAAUGAC - 56
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-8908b-3p

• Accession: MIMAT0034415
• Description: Canis lupus familiaris cfa-miR-8908b-3p mature miRNA
• Sequence: 70 - GAUUAGUUCCUGCCUGGAUACA - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545