Stem-loop cfa-mir-507b

Accession

MI0028017

Description

Canis lupus familiaris cfa-mir-507b precursor miRNA

Sequence

1806 reads, 35.0 reads per million, 39 experiments

uuaaccaaacuuugugcagugcccCAUUCAAAAAGGUGCCAUUCAgguauacuaaaauaugAUUGGCACUUUUUUGAGUGUGguaauucacaacauguacaaccaca
...........(((((...((((.(((((((((((((((((.(((.((........)).))).))))))))))))))))).))))...)))))..............

Structure

---uuaaccaaacu     cag    c                 U   g  aua 
              uugug   ugcc CAUUCAAAAAGGUGCCA UCA gu   c
              |||||   |||| ||||||||||||||||| ||| ||    
              aacac   augG GUGAGUUUUUUCACGGU Agu ua   u
acaccaacauguac     uua    U                 U   a  aaa 

Annotation confidence Medium

Genome context

X: 117719861-117719967 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-507b

Mature cfa-miR-507b-5p

• Accession: MIMAT0052004
• Description: Canis lupus familiaris cfa-miR-507b-5p mature miRNA
• Sequence: 25 - CAUUCAAAAAGGUGCCAUUCA - 45
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-507b-3p

• Accession: MIMAT0034416
• Description: Canis lupus familiaris cfa-miR-507b-3p mature miRNA
• Sequence: 62 - AUUGGCACUUUUUUGAGUGUG - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545