Stem-loop cfa-mir-8908f

Accession

MI0028019

Description

Canis lupus familiaris cfa-mir-8908f precursor miRNA

Sequence

10161 reads, 68.0 reads per million, 60 experiments

gguugguucuguuuguggauccagacugugugcagugcccUACUCAGAAAGGUGGUCAUCACauagacucacuuguAGUGACUGCAAGCCUGAGUAGAgcaaagcucaccagcacaacagaugcaccggccuaugggacugugau
(((((((((((((.(((........(((((.((..(((.((((((((....((((((((.(((..........))).))))))))....)))))))).)))..)).)).))))))))))))...)))))))..............

Structure

--------------       ---      u   gauccaga   -  u  ag   c        AAAG        C   uaga 
              gguuggu   ucuguu gug        cug ug gc  ugc cUACUCAG    GUGGUCAU ACa    c
              |||||||   |||||| |||        ||| || ||  ||| ||||||||    |||||||| |||     
              ccggcca   agacaa cac        gac ac cg  acg GAUGAGUC    CGUCAGUG ugu    u
uagugucaggguau       cgu      -   --------   c  u  aa   A        CGAA        A   ucac 

Annotation confidence High

Genome context

X: 116765260-116765404 [-]

Mature cfa-miR-8908f-5p

• Accession: MIMAT0034418
• Description: Canis lupus familiaris cfa-miR-8908f-5p mature miRNA
• Sequence: 41 - UACUCAGAAAGGUGGUCAUCAC - 62
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-8908f-3p

• Accession: MIMAT0052005
• Description: Canis lupus familiaris cfa-miR-8908f-3p mature miRNA
• Sequence: 77 - AGUGACUGCAAGCCUGAGUAGA - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545