Stem-loop cfa-mir-508a

Accession

MI0028020

Description

Canis lupus familiaris cfa-mir-508a precursor miRNA

Sequence

4283 reads, 56.0 reads per million, 46 experiments

cugaguguagugcucUACUUGAGAGGGUGACAUUCAUagauacuagaacaugACUGUCACCUUUUUUGAGUACAguaaugcacauuauauacaau
....(((((.((((.(((((((((((((((((.((((............)))).))))))).)))))))))).)))).)))))............

Structure

--------cuga     g    c          -       U    agaua 
            gugua ugcu UACUUGAGAG GGUGACA UCAU     c
            ||||| |||| |||||||||| ||||||| ||||      
            cacgu augA AUGAGUUUUU CCACUGU Agua     u
uaacauauauua     a    C          U       C    caaga 

Annotation confidence High

Genome context

X: 117713081-117713175 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from cfa-mir-508a

Mature cfa-miR-508a-5p

• Accession: MIMAT0034419
• Description: Canis lupus familiaris cfa-miR-508a-5p mature miRNA
• Sequence: 16 - UACUUGAGAGGGUGACAUUCAU - 37
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-508a-3p

• Accession: MIMAT0052006
• Description: Canis lupus familiaris cfa-miR-508a-3p mature miRNA
• Sequence: 53 - ACUGUCACCUUUUUUGAGUACA - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545