Stem-loop cfa-mir-8908d-2

Accession

MI0028021

Description

Canis lupus familiaris cfa-mir-8908d-2 precursor miRNA

Sequence

4725 reads, 24.0 reads per million, 45 experiments

ucugcaggccacgcugaguuuggggccCUACCCAGAAAGGUGCUGAUGAggcaggauacagauuaUUAGCGCCUGACUGAGUGGGGUcccaaucaguaacagaacugcccgug
...((((..(..(((((..((((((((((((.(((..((((((((((((....(....)...))))))))))))..))).)))))))))))))))))....)..)))).....

Structure

--ucu    gc --ac     gu            C   AA            ggca g 
     gcag  c    gcuga  uuggggccCUAC CAG  AGGUGCUGAUGA    g a
     ||||  |    |||||  |||||||||||| |||  ||||||||||||    |  
     cguc  g    ugacu  aacccUGGGGUG GUC  UCCGCGAUUauu    c u
gugcc    aa acaa     --            A   AG            -aga a 

Annotation confidence High

Genome context

X: 116727795-116727907 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from cfa-mir-8908d-2

Mature cfa-miR-8908d-5p

• Accession: MIMAT0052007
• Description: Canis lupus familiaris cfa-miR-8908d-5p mature miRNA
• Sequence: 28 - CUACCCAGAAAGGUGCUGAUGA - 49
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-8908d-3p

• Accession: MIMAT0034420
• Description: Canis lupus familiaris cfa-miR-8908d-3p mature miRNA
• Sequence: 66 - UUAGCGCCUGACUGAGUGGGGU - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545