Stem-loop cfa-mir-8908d-3

Accession

MI0028022

Description

Canis lupus familiaris cfa-mir-8908d-3 precursor miRNA

Sequence

4725 reads, 24.0 reads per million, 45 experiments

ccuccucugcaggccacgcugaguuuggggccCUACCCAGAAAGGUGCUGAUAaggcaggauacagauuaUUAGCGCCUGACUGAGUGGGGUcccgaucaguaauauaacuaccuguggcgac
............((((((((((..((((((((((((.(((..((((((((((((....(....)...))))))))))))..))).))))))))))))))))).............)))))...

Structure

ccuccucugcag     -------------     gu            C   AA            ggca g 
            gccac             gcuga  uuggggccCUAC CAG  AGGUGCUGAUAa    g a
            |||||             |||||  |||||||||||| |||  ||||||||||||    |  
            cggug             ugacu  agcccUGGGGUG GUC  UCCGCGAUUauu    c u
---------cag     uccaucaauauaa     --            A   AG            -aga a 

Annotation confidence High

Genome context

X: 116733985-116734107 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from cfa-mir-8908d-3

Mature cfa-miR-8908d-3-5p

• Accession: MIMAT0061631
• Description: Canis lupus familiaris cfa-miR-8908d-3-5p mature miRNA
• Sequence: 33 - CUACCCAGAAAGGUGCUGAUA - 53
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-8908d-3p

• Accession: MIMAT0034420
• Description: Canis lupus familiaris cfa-miR-8908d-3p mature miRNA
• Sequence: 71 - UUAGCGCCUGACUGAGUGGGGU - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545