Stem-loop cfa-mir-2483

Accession

MI0028023

Description

Canis lupus familiaris cfa-mir-2483 precursor miRNA

Sequence

4422 reads, 19.0 reads per million, 71 experiments

gucucuauggcucucucucagauauuugagugaaaaguucAGUCAACCAUCCAGCUGUUUGAguugaugcaagcAAACAUCUGGUUGGUUGAGAGAauuuuuuacuuagucucuggauguuuggagucauuuaacaggc
((((..(((((((((((.((((...(((((((((((((((..(((((((.((((.((((((..(((...))).)))))).)))).)))))))..)))))))))))))))..)))))).)...)))))))).....))))

Structure

    ---cu        --- -  u    uau               AG       U    C      Ag   a 
gucu     auggcucu   c uc caga   uugagugaaaaguuc  UCAACCA CCAG UGUUUG  uug  
||||     ||||||||   | || ||||   |||||||||||||||  ||||||| |||| ||||||  ||| u
cgga     uacugagg   g ag gucu   gauucauuuuuuaAG  AGUUGGU GGUC ACAAAc  aac  
    caauu        uuu u  -    -cu               AG       U    U      -g   g 

Annotation confidence High

Genome context

X: 98338164-98338302 [-]

Mature cfa-miR-2483-5p

• Accession: MIMAT0034421
• Description: Canis lupus familiaris cfa-miR-2483-5p mature miRNA
• Sequence: 41 - AGUCAACCAUCCAGCUGUUUGA - 62
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-2483-3p

• Accession: MIMAT0052008
• Description: Canis lupus familiaris cfa-miR-2483-3p mature miRNA
• Sequence: 75 - AAACAUCUGGUUGGUUGAGAGA - 96
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545