Stem-loop cfa-mir-2114

Accession

MI0028029

Description

Canis lupus familiaris cfa-mir-2114 precursor miRNA

Sequence

919 reads, 7.0 reads per million, 68 experiments

aacccucgggccaaaggacaugccacggccuccaggcuucUAGUCCCUUCCUUGAAGGAUCGGCaagucacacgcAGAGCCUCAAGCAAGGGACUUCCagcugguggcuuccagcagcuuccugcuccugaaccaccaucguc
.....(((((....((((..(((...((((.((((.((...((((((((.(((((.((.((.((.........)).)).))))))).))))))))...)))))).))))....)))...))))...)))))............

Structure

-------aaccc     ccaa    -ca   -cac    u    g  ucU        C     A  A  G  aag 
            ucggg    agga   ugc    ggcc ccag cu   AGUCCCUU CUUGA GG UC GC   u
            |||||    ||||   |||    |||| |||| ||   |||||||| ||||| || || ||   c
            agucc    uccu   acg    ucgg gguc ga   UCAGGGAA GAACU CC AG cg   a
cugcuaccacca     -ucg    ucg   accu    u    -  CCU        C     -  G  A  cac 

Annotation confidence High

Genome context

X: 120754558-120754700 [+]

Mature cfa-miR-2114-5p

• Accession: MIMAT0034427
• Description: Canis lupus familiaris cfa-miR-2114-5p mature miRNA
• Sequence: 41 - UAGUCCCUUCCUUGAAGGAUCGGC - 64
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-2114-3p

• Accession: MIMAT0052012
• Description: Canis lupus familiaris cfa-miR-2114-3p mature miRNA
• Sequence: 76 - AGAGCCUCAAGCAAGGGACUUCC - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545